Kumar, Nilesh, Bharat Mishra, and M. Shahid Mukhtar. “A pipeline of integrating transcriptome and interactome to elucidate central nodes in host-pathogens interactions.” STAR protocols 3.3 (2022): 101608.
Mishra, Bharat, Nilesh Kumar, and M. Shahid Mukhtar. “A rice protein interaction network reveals high centrality nodes and candidate pathogen effector targets.” Computational and structural biotechnology journal 20 (2022): 2001-2012.
Carter AM, Kumar N, Herring B, Tan C, Guenter R, Telange R, Howse W, Viol F, McCaw TR, Bickerton HH, Gupta P. Cdk5 drives formation of heterogeneous pancreatic neuroendocrine tumors. Oncogenesis. 2021 Dec 3;10(12):1-3.
Verma, N., Kumar, N., Mishra, P., & Purohit, N. (2021). Profound implications of COVID-19 pandemic lockdown on the Earth’s ecosystem: a case study using remote sensing data. Current Science, 121(1), 115.
Mishra, Bharat, Nilesh Kumar, and M. Shahid Mukhtar. “Network biology to uncover functional and structural properties of the plant immune system.” Current Opinion in Plant Biology 62 (2021): 102057.
Yoshino, Yuta, Bhaskar Roy, Nilesh Kumar, M. Shahid Mukhtar, and Yogesh Dwivedi. “Molecular pathology associated with altered synaptic transcriptome in the dorsolateral prefrontal cortex of depressed subjects.” Translational psychiatry 11, no. 1 (2021): 1-16.
Kumar, Nilesh, et al. “Integrative network biology framework elucidates molecular mechanisms of SARS-CoV-2 pathogenesis.” Iscience 23.9 (2020): 101526.
Carter AM, Tan C, Pozo K, Telange R, Molinaro R, Guo A, De Rosa E, Martinez JO, Zhang S, Kumar N, Takahashi M. Phosphoprotein-based biomarkers as predictors for cancer therapy. Proceedings of the National Academy of Sciences. 2020 Aug 4;117(31):18401-11.
Mishra B, Kumar N, Mukhtar MS. Systems biology and machine learning in plant–pathogen interactions. Molecular Plant-Microbe Interactions. 2019 Jan 13;32(1):45-55.
Mishra B, Sun Y, Howton TC, Kumar N, Mukhtar MS. Dynamic modeling of transcriptional gene regulatory network uncovers distinct pathways during the onset of Arabidopsis leaf senescence. NPJ systems biology and applications. 2018 Aug 31;4(1):1-4.
Singh, P., Kumar, N., Jethva, M., Yadav, S., Kumari, P., Thakur, A., & Kushwaha, H. R. (2018). Riboswitch regulation in cyanobacteria is independent of their habitat adaptations. Physiology and Molecular Biology of Plants, 24(2), 315-324.
Kumar R, Mishra BK, Lahiri T, Kumar G, Kumar N, Gupta R, Pal MK. PCV: an alignment free method for finding homologous nucleotide sequences and its application in phylogenetic study. Interdisciplinary Sciences: Computational Life Sciences. 2017 Jun;9(2):173-83.
Gupta CL, Akhtar S, Kumar N, Ali J, Pathak N, Bajpai P. In silico elucidation and inhibition studies of selected phytoligands against mitogen-activated protein kinases of protozoan parasites. Interdisciplinary Sciences: Computational Life Sciences. 2016 Mar;8(1):41-52.
